Negative thermal expansibility change for dissociation of lysozyme variant amyloid protofibril

A disulfide‐deficient variant of hen lysozyme, 0SS, is known to form an amyloid protofibril spontaneously, and to dissociate into monomers at high hydrostatic pressure. We carried out native PAGE at various temperatures (20–35°C) and pressures (0.1–200 MPa), to characterize the dissociation equilibrium of disulfide‐deficient variant of hen lysozyme amyloid protofibril. Based on the density profiles, the partial molar volume and thermal expansibility changes for dissociation, Δv_D and Δe_D, were obtained to be ?74 cm³/mol at 25°C and ?2.3 cm³ mol^?1 K^?1, respectively. The dissociation of amyloid fibril destroys the cross β‐structure, and such conformational destruction in native protein fold rarely accompanies negative thermal expansibility change. We discussed the negative thermal expansibility change in terms of hydration and structural packing of the amyloid protofibril.     

Dominant factors affecting the pressure dependence of melting temperatures in homologous series of aliphatic polyesters

The pressure dependence of the melting temperature of six aliphatic polyesters belonging to two different homologous series, poly(x-succinate) and poly(x-adipate) having even number of methylene groups (2,4,6) in the alkylene segment (x) was investigated by high pressure differential thermal analysis (HP-DTA) up to 500 MPa. The phase diagrams of these polyesters were newly determined except for poly(ethylene adipate). The dT_m/dp_o at atmospheric pressure was obtained from the quadratic equation and the trend of dT_m/dp_o with respect to the number of methylene groups in the monomer unit in each homologous series is discussed. Amorphous densities at 25 °C, expansion and compressibility coefficients in the melt of these polyesters are also reported. The entropy of fusion (ΔS_m), enthalpy of fusion (ΔH_m), volume change on melting (ΔV_m), conformational entropy (ΔS^or) and volume entropy (ΔS^v) were correlated with respect to the number of methylene groups in the alkylene segment. ΔV_m and ΔS^v displayed a similar trend as that of dT_m/dp_o while ΔS_m, ΔS^or and ΔH_m showed an increasing trend. The influence of these parameters on dT_m/dp_o is discussed in the context of the Clapeyron equation.     

A Thermodynamic Study of Chromotropico-Titanium(III) Complex from Spectrophotometric Measurements

The formation of 1 : 2 titanium(III) complex with chromotropic acid (4, 5-dihydroxy-2, 7-naphthalene-disulfonic acid) was observed by spectrophotometric measurements at various ionic strengths. An expression, [Ti(III)]/D=1/Δ? + α_H²+/KΔ?[H₂R^2?]², was derived for the determination of the formation constant, K=7.2×10² liter² mol^?2 for the Ti(III).(HR)₂ ion in the pH range of 1.3–1.8 at constant ionic strength, I=0.2 M, at 25°C. The thermodynamic data for the reaction, Ti(III)+2H₃R^2?=Ti(III) (HR)₂+2H⁺, were calculated to be ΔG° = ?16 kJ mol^?1 ΔH° = 18 kJ mol^?1, ΔS° = 110 JK^?1 mol^?1, at 25°C.     

Thermochemistry of the Acid-Base Interactions in Aqueous Solutions of Isonicotinic and Picolinic Acids

The calorimetric method was employed to measure the heat effects of the interaction of isonicotinic and picolinic acids with HNO₃in aqueous solutions over different pH ranges at 298.15 K and ionic strengths of 0.5, 1.0, and 1.5 against potassium nitrate. The heat effects of stepwise dissociation of the acids were determined. The standard thermodynamic characteristics (Δ_rH°, Δ_rG°, Δ_rS°, ΔC_p°) of the acid-base reactions in aqueous solutions of isonicotinic and picolinic acids were calculated.

     

The solvation of L-serine in mixtures of water with some aprotic solvents at 298.15 K

The integral enthalpies of solution Δ_sol H ^m of L-serine in mixtures of water with acetonitrile, 1,4-dioxane, dimethylsulfoxide (DMSO), and acetone were measured by solution calorimetry at organic component concentrations up to 0.31 mole fractions. The standard enthalpies of solution (Δ_sol H°), transfer (Δ_tr H°), and solvation (Δ_solv H°) of L-serine from water into mixed solvents were calculated. The dependences of Δ_sol H°, Δ_solv H°, and Δ_tr H° on the composition of aqueous-organic solvents contained extrema. The calculated enthalpy coefficients of pair interactions of the amino acid with cosolvent molecules were positive and increased in the series acetonitrile, 1,4-dioxane, DMSO, acetone. The results obtained were interpreted from the point of view of various types of interactions in solutions and the influence of the nature of organic solvents on the thermochemical characteristics of solutions.     

Factors influencing the mechanism of surfactant catalyzed reaction of vitamin C-ferric chloride hexahydrate system

The kinetics of vitamin C by ferric chloride hexahydrate has been investigated in the aqueous ethanol solution of basic surfactant viz. octadecylamine (ODA) under pseudo-first order conditions. The critical micelle concentration (CMC) of surfactant was determined by surface tension measurement. The effect of pH (2.5–4.5) and temperature (15–35°C) in the presence and absence of surfactant were investigated. Activation parameters, ΔE _a, ΔH ^#, ΔS ^#, ΔG ^≠, for the reaction were calculated by using Arrhenius and Eyring plot. Surface excess concentration (Γ_max), minimum area per surfactant molecule (A _min), average area occupied by each molecule of surfactant (a), surface pressure at the CMC (Π_max), Gibb’s energy of micellization (ΔG _M°), Gibb’s energy of adsorption (ΔG _ad°), were calculated. It was found that the reaction in the presence of surfactant showed faster oxidation rate than the aqueous ethanol solution. Reaction mechanism has been deduced in the presence and absence of surfactant.     

New insight into the substituent effects on the hydrolytic deamination of saturated and unsaturated cytosine

Ab initio calculations were carried out to understand the effect of electron donating groups (EDG) and electron withdrawing groups (EWG) at the C5 position of cytosine (Cyt) and saturated cytosine (H₂Cyt) of the deamination reaction. Geometries of the reactants, transition states, intermediates, and products were fully optimized at the B3LYP/6-31G(d,p) level in the gas phase as this level of theory has been found to agree very well with G3 theories. Activation energies, enthalpies, and Gibbs energies of activation along with the thermodynamic properties (ΔE, ΔH, and ΔG) of each reaction were calculated. A plot of the Gibbs energies of activation (ΔG^‡) for C5 substituted Cyt and H₂Cyt against the Hammett σ-constants reveal a good linear relationship. In general, both EDG and EWG substituents at the C5 position in Cyt results in higher ΔG^‡ and lower σ values compared to those of H₂Cyt deamination reactions. C5 alkyl substituents ( H,  CH₃,  CH₂CH₃,  CH₂CH₂CH₃) increase ΔG^‡ values for Cyt, while the same substituents decrease ΔG^‡ values for H₂Cyt which is likely due to steric effects. However, the Hammett σ-constants were found to decrease at the C5 position of cytosine (Cyt) and saturated cytosine (H2Cyt) on the deamination reaction. Both ΔG^‡ and σ values decrease for the substituents Cl and Br in the Cyt reaction, while ΔG^‡ values increase and σ decrease in the H₂Cyt reaction. This may be due to high polarizability of bromine which results in a greater stabilization of the transition state in the case of bromine compared to chlorine. Regardless of the substituent at C5, the positive charge on C4 is greater in the TS compared to the reactant complex for both the Cyt and H₂Cyt. Moreover, as the charges on C4 in the TS increase compared to reactant, ΔG^‡ also increase for the C5 alkyl substituents ( H,  CH₃,  CH₂CH₃,  CH₂CH₂CH₃) in Cyt, while ΔG^‡ decrease in H₂Cyt. In addition, analysis of the frontier MO energies for the transition state structures shows that there is a correlation between the energy of the HOMO–LUMO gap and activation energies.     

Coordination properties of bidentate (N,O) and tridentate (N,O,O) heterocyclic alcohols with dimethyltin(IV)

The complex-formation equilibria of dimethyltin(IV) (DMT) with 4-hydroxymethyl imidazole (HMI) and 2,6-dihydroxymethyl pyridine (PDC) have been investigated. Stoichiometry and stability constants for the complexes formed were determined at different temperatures and 0.1?mol?L^?1 NaNO₃ ionic strength. The concentration distribution of the complexes in solution was evaluated as a function of pH. The effect of dioxane as a solvent on both protonation constants and formation constants of DMT complexes with HMI and PDC are discussed. The thermodynamic parameters ΔH° and ΔS° calculated from the temperature dependence of the equilibrium constants were investigated.     

Ruthenium(III)-catalyzed mechanistic studies of oxidation of benzhydrols by sodium N-chloro-p-toluenesulfonamide in HCl medium

The kinetics of oxidation of benzhydrol and its p-substituted derivatives (YBH, where Y=H, Cl, Br, NO₂, CH₃, and OCH₃) by sodium N-chloro-p-toluenesulfonamide or chloramine-T (CAT), catalyzed by ruthenium(III) chloride, in the presence of hydrochloric acid in 30% (v/v) MeOH medium has been studied at 35°C. The reaction rate shows a first-order dependence on [CAT]_O and a fractional-order each on [ YBH]_O, [Ru(III)], and [H⁺]. The reaction also has a negative fractional-order (−0.35) behavior in the reduction product of CAT, p-toluenesulfonamide (PTS). The increase in MeOH content of the solvent medium retards the rate. The variation of ionic strength of the medium has negligible effect on the rate. Rate studies in D₂O medium show that the solvent isotope effect, k′H₂O/k′D₂O, is equal to 0.60. Proton inventory studies have been made in H₂O(SINGLEBOND)D₂O mixtures. The rates correlate satisfactorily with Hammett σ relationship. The LFE relationship plot is biphasic and the reaction constant ρ=−2.3 for electron donating groups and ρ=−0.32 for electron withdrawing groups at 35°C. Activation parameters ΔH^≠, ΔS^≠, and ΔG^≠ have been calculated. The parameters, ΔH^≠ and ΔS^≠, are linearly related with an isokinetic temperature β=334 K indicating enthalpy as a controlling factor. A mechanism consistent with the observed kinetics has been proposed. © 1997 John Wiley & Sons, Inc.     

Complexation of neptunium(V) by salicylate,phthalate and citrate ligands in a pH 7.5 phosphate buffered system

Conditional stability constants, enthalpies and entropies of complexation at pH 7.5 and ionic strength 0.1 have been determined for neptunium(V) complexes of phosphate, salicylate, phthalate and citrate. Phosphate forms a complex with log β = 2.36 ± 0.42 at 25°C, ΔH°_c = ? 69.9 kJ/mole and ΔS°_c = ? 188 J/mole-K. At pH 7.5 salicylate does not form a complex with neptunium(V) due to the low charge density of the NpO₂⁺ ion and incomplete ionization of the salicylate ion. Phthalate forms a complex with log β = 3.43 ± 0.33 at 25°C, ΔH°_c = 33.5 kJ/mole and ΔS°_c = 182 J/mole-K. Citrate forms a complex with log β = 4.84 ± 0.72 at 25°C, ΔH°_c = 14.0 kJ/mole and ΔS°_c = 140 J/mole-K. In all cases, only 1:1 complexes were identified.     

Kinetics of Oxygen Exchange in the System BrO - H2O (D2O)

The kinetics of oxygen exchange between water (H₂O, D₂O) and ¹⁸O-labelled bromate ion has been investigated over the range of 1.7 ≤ pH ≤ 14.3 and 20 ≤ °C ≤ 95. At 60° and ionic strength I ? 1.0M (NaNO₃), the experimental results were consistent with the rate laws (R in moll^?1 s^?1): From the temperature dependence of the rate constants the activation parameters ΔH^≠, ΔS^≠ and ΔC^≠ were derived. In the acid-catalysed region the form of the rate law and the direction of the solvent isotope effect were the same as previously found, but the numerical values of ΔH^≠ and k_2H/k_2D differ considerably. For the spontaneous and the OH^?-catalysed exchange reactions bimolecular displacement mechanisms are proposed.     

Encapsulation‐Induced Remarkable Stability of a Hydrogen‐Bonded Heterocapsule

Remarkably enhanced stability of the self‐assembled hydrogen‐bonded heterocapsule 1?2 by the encapsulation of 1,4‐bis(1‐propynyl)benzene 3 a was found with K_a=1.14×10⁹ M ^?1 in CDCl₃ and K_a2=1.59×10⁸ M ^?2 in CD₃OD/CDCl₃ (10 % v/v) at 298 K. The formation of 3 a @( 1?2 ) was enthalpically driven (ΔH°<0 and ΔS°<0) and there was a unique inflection point in the correlation between ΔH° versus ΔS° as a function of polar solvent content. The ab initio calculations revealed that favorable guest–capsule dispersion and electrostatic interactions between the acetylenic parts (triple bonds) of 3 a and the aromatic inner space of 1?2 , as well as less structural deformation of 1?2 upon encapsulation of 3 a , play important roles in the remarkable stability of 3 a @( 1?2 ).     

Dynamic changes in composition of extracts of natural products as monitored by in situ NMR

The direct in situ NMR observation and quantification, based on the aldehyde –CH chemical shift region, of the inter‐conversion of secoiridoid derivatives due to temperature and solvent effects is demonstrated in complex extracts of natural products without prior isolation of the individual components. The equilibrium between the aldehyde hydrate form and the dialdehyde form of the oleuropein aglycon of an olive leaf aqueous extract in D₂O was shown to be temperature dependent. The resulting thermodynamic values of the Van't Hoff plot with ΔH^o = ?26.34 ± 1.00 kJ mol^?1 and TΔS° (298 K) = ?24.70 ± 1.00 kJ mol^?1 demonstrate a significant entropy term which nearly compensates the effect of enthalpy at room temperature. The equilibrium between the two diastereomeric hemiacetal forms and the dialdehyde form of the oleuropein 6‐O‐β‐d ‐glucopyranoside aglycon of an olive leaf aqueous extract in CD₃OD was also shown to be strongly temperature dependent again because of the significant entropy term (TΔS° (298 K) = ?26.50 ± 1.39 kJ mol^?1) compared with that of the enthalpy term (ΔH^o = ?36.64 ± 1.46 kJ mol^?1). This is the first demonstration of the significant role of the entropy parameter in determining the equilibrium of chemical transformations in complex mixtures of natural products due to solvent and temperature effects. Copyright © 2014 John Wiley & Sons, Ltd.     

High‐performance liquid chromatographic enantioseparation of isoxazoline‐fused 2‐aminocyclopentanecarboxylic acids on a chiral ligand‐exchange stationary phase

The application of a chiral ligand‐exchange column for the direct high‐performance liquid chromatographic enantioseparation of unusual β‐amino acids with a sodium N‐((R)‐2‐hydroxy‐1‐phenylethyl)‐N‐undecylaminoacetate‐Cu(II) complex as chiral selector is reported. The investigated amino acids were isoxazoline‐fused 2‐aminocyclopentanecarboxylic acid analogs. The chromatographic conditions were varied to achieve optimal separation. The effects of temperature were studied at constant mobile phase compositions in the temperature range 5–45°C, and thermodynamic parameters were calculated from plots of lnk or lnα versus 1/T. Δ(ΔH°) ranged from –2.3 to 2.2 kJ/mol, Δ(ΔS°) from –3.0 to 7.8 J mol^?1 K^?1 and –Δ(ΔG°) from 0.1 to 1.7 kJ/mol, and both enthalpy‐ and entropy‐controlled enantioseparations were observed. The latter was advantageous with regard to the shorter retention and greater selectivity at high temperature. Some mechanistic aspects of the chiral recognition process are discussed with respect to the structures of the analytes. The sequence of elution of the enantiomers was determined in all cases.     

1-(2′-Deoxy-β-D-xylofuranosyl)cytosine: Base pairing of oligonucleotides with a configurationally altered sugar-phosphate backbone

Solid-phase synthesis of the oligo(2′-deoxynucleotides) 19 and 20 containing 2′-deoxy-β-D -xylocytidine ( 4 ) is described. For this purpose, 1-(2-deoxy-β-D -threo-pentofuranosyl)cytosine ( = 1-(2-deoxy-β-D -xylofuranosyl)-cytosine; 4 ) was protected at its 4-NH₂ group with a benzoyl (→ 5 ) or an isobutyryl (→ 8 ) residue, and a dimethoxytrityl group was introduced at 5′-OH (→ 7, 10 ; Scheme 2). Compounds 7 and 10 were converted into the 3′-phosphonates 11a,b . While 19 could be hybridized with 21 and 22 under formation of duplexes with a two-nucleotide overhang on both termini ( 19 · 21 : T_m 29°; 19 · 22 : T_m 22°), the decamer 20 bearing four xC_d residues could no longer be hybridized with one of the opposite strands. Moreover, the oligonucleotides d[(xC)₈? C] ( 13 ), d[(xC)₄? C] ( 14 ), d[C? (xC)₄? C] ( 15 ), and d[C? (xC)₃? C] ( 16 ) were synthesized. While 13 exhibits an almost inverted CD spectrum compared to d(C₉) ( 17 ), the other oligonucleotides show CD spectra typical for regular right-handed single helices. At pH 5, d[(xC)₈? C] forms a stable hemi-protonated duplex which exhibits a T_m of 60° (d[(CH⁺)₉] · d(C₉): T_m 36°). The thermodynamic parameters of duplex formation of ( 13H ⁺ · 13 ) and ( 17H ⁺ · 17 ) were calculated from their melting profiles and were found to be identical in ΔH but differ in ΔS ( 13H ⁺ · 13 : ΔS = ?287 cal/K mol; 17H ⁺ · 17 : ΔS = ?172 cal/K mol).     

Modelling of proton and metal exchange in the alginate biopolymer

Acid–base behaviour of a commercial sodium alginate extracted from brown seaweed (Macrocystis pyrifera) has been investigated at different ionic strengths (0.1≤I/mol l^?1≤1.0) and in different supporting electrolytes (Et₄NI, NaCl, KCl, LiCl, NaCl+MgCl₂), with the aim of examining the influence of ionic medium on the proton-binding capacity and of quantifying the strength of interaction with light metal ions in the perspective of speciation studies in natural aqueous systems. Potentiometric ([H⁺]-glass electrode) and titration calorimetric data were expressed as a function of the dissociation degree (α) using different models (Henderson–Hasselbalch modified, Högfeldt three parameters and linear equations). The dependence on ionic strength of the protonation constants was taken into account by a modified specific interaction theory model. Differences among different media were explained in terms of the interaction between polyanion and metal cations of the supporting electrolytes. Quantitative information on the proton-binding capacity, together with the stabilities of different species formed, is reported. Protonation thermodynamic parameters, at α=0.5, are log K ^H=3.686±0.005, ΔG ⁰=?21.04±0.03 kJ mol^?1, ΔH ⁰=4.8±0.2 kJ mol^?1 and TΔS ⁰=35.7±0.3 kJ mol^?1, at infinite dilution. Protonation enthalpies indicate that the main contribution to proton binding arises from the entropy term. A strict correlation between ΔG and TΔS was found, TΔS=?9.5–1.73 ΔG. Results are reported in light of building up a chemical complexation model of general validity to explain the binding ability of naturally occurring polycarboxylate polymers and biopolymers. Speciation profiles of alginate in the presence of sodium and magnesium ions, naturally occurring cations in natural waters, are also reported.     

Thermodynamic studies of Ni(II) adsorption onto bentonite from aqueous solution

The adsorption behavior of Ni(II) onto bentonite was studied as a function of temperature under optimized conditions of shaking time, amount of adsorbent, pH, and concentration of the adsorbate. Thermodynamic parameters such as ΔH^°, ΔS^°, and ΔG^° were calculated from the slope and intercept of the linear plot of lgK_D against 1/T. Analysis of adsorption results obtained at T=(298, 303, 313, and 323) K showed that the adsorption pattern on bentonite followed the Langmuir, Freundlich, and D-R isotherms. A flame atomic absorption spectrophotometer was used for measuring the concentration of Ni(II).     

Kinetic and thermodynamic properties of the aerial oxidation of hydroquinone in developer solutions

The aerial oxidation kinetics of hydroquinone in a freshly prepared developer solution at different temperatures and pHs has been studied. The activation parameters, Ea, ΔG# , ΔS# , ΔH# and enthalpy of formation of activated complex, ΔHfo(X# ), are determined. The large negative value of free energy of activation ΔG# proves that hydroquinone extremely tends to be oxidized by air at optimum temperature (20℃) and optimum pH (10.5) and converts to the activated complex semiquinone. It was also found that if the pH of the developer solution is increased from 9.3 to 10.5 the reaction rate will increase by a factor of 2.     

Multiple melting behavior of poly(butylene succinate). I. Thermal analysis of melt‐crystallized samples

The multiple melting behavior of poly(butylene succinate) (PBSu) was studied with differential scanning calorimetry (DSC). Three different PBSu resins, with molecular weights of 1.1 × 10⁵, 1.8 × 10⁵, and 2.5 × 10⁵, were cooled from the melt (150 °C) at various cooling rates (CRs) ranging from 0.2 to 50 K min^?1. The peak crystallization temperature (T_c) of the DSC curve in the cooling process decreased almost linearly with the logarithm of the CR. DSC melting curves for the melt‐crystallized samples were obtained at 10 K min^?1. Double endothermic peaks, a high‐temperature peak H and a low‐temperature peak L, and an exothermic peak located between them appeared. Peak L decreased with increasing CR, whereas peak H increased. An endothermic shoulder peak appeared at the lower temperature of peak H. The CR dependence of the peak melting temperatures [T_m(L) and T_m(H)], recrystallization temperature (T_re), and heat of fusion (ΔH) was obtained. Their fitting curves were obtained as functions of log(CR). T_m(L), T_re, and ΔH decreased almost linearly with log(CR), whereas T_m(H) was almost constant. Peak H decreased with the molecular weight, whereas peak L increased. It was suggested that the rate of the recrystallization decreased with the molecular weight. T_m(L), T_m(H), T_re, and T_c for the lowest molecular weight sample were lower than those for the others. In contrast, ΔH for the highest molecular weight sample was lower than that for the others. If the molecular weight dependence of the melting temperature for PBSu is similar to that for polyethylene, the results for the molecular weight dependence of PBSu can be explained. © 2002 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 40: 2411–2420, 2002     

Water-Exchange Mechanism of Tetraaquapalladium(II). A Variable-Pressure and Variable-Temperature Oxygen-17 NMR Study

Water exchange of square-planar Pd(H₂O)²₄⁺ has been studied as a function of temperature (240 to 345 K) and pressure (0.1 to 260 MPa, at 324 K) by measuring the ^17/O-FT-NMR line-widths of the resonance from coordinated water at 27.11 and 48.78 MHz. The following exchange parameters were obtained: k²⁹⁸_ex = (560 ± 40) s^?1, ΔH* = (49.5 ± 1.9) kJ mol^?1, ΔS* = – (26 ± 6) J K^?1 mol^?1 and ΔV* = – (2.2 ± 0.2) cm³ mol^?1. The values refere to an aqueous perchlorate medium with an ionic strength between 2.0 and 2.6 m and a perchloric-acid concentration between 0.8 and 1.7 m, and are interpreted in terms of an associative (a) activation for the exchange. The exchange rate for Pd(H₂O)²₄⁺ is 1.4 × 10⁶ times faster than for Pt(H₂O)²₄⁺ at 298 K. A comparison with reactions between other nucleophiles and Pd(H₂O)²₄⁺ is also made.